RevEcoR - Reverse Ecology Analysis on Microbiome
An implementation of the reverse ecology framework. Reverse ecology refers to the use of genomics to study ecology with no a priori assumptions about the organism(s) under consideration, linking organisms to their environment. It allows researchers to reconstruct the metabolic networks and study the ecology of poorly characterized microbial species from their genomic information, and has substantial potentials for microbial community ecological analysis.
Last updated 6 years ago
5.77 score 6 stars 1 dependents 22 scripts 191 downloadsGeneExpressionSignature - Gene Expression Signature based Similarity Metric
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
Last updated 5 months ago
geneexpression
5.00 score 1 stars 5 scripts 364 downloads